Reading and writing

Read profiles, plates and JUMP data into AnnData or SpatialData, and check them against the schema.

io.read_profiles(paths[, metadata_prefixes, ...])	Read profiles into an AnnData of observations by features.
io.read_plate(path[, plate, batch, layout, ...])	Read one plate of images, segmentations and measurements into a SpatialData object.
io.read_jump(paths[, annotate])	Read JUMP plate profiles, optionally joining the annotation.
io.read(path[, backed, migrate_schema])	Read a mantispy h5ad or zarr store, checking its schema version.
io.write(adata, path)	Validate and write adata as h5ad (default) or zarr (.zarr suffix).
io.stamp(adata[, resolution, copy])	Mark an AnnData built elsewhere as a mantispy object.
io.validate(adata, *[, raise_on_error])	Check adata against the mantispy schema.

class mantispy._core.schema.ValidationReport(errors=<factory>, warnings=<factory>)

Result of validate().

Truthy when there are no errors.

property ok: bool

Whether the object satisfies the schema.