mantispy.ds.corum

mantispy.ds.corum(cache_dir=None)

Human protein complexes from CORUM, one row per complex and member gene.

The complexes as the EFAAR benchmark of Celik et al. [2024] distributes them, in the source/target shape known_relationships() and pathway_coherence() read, so two genes of one complex count as a related pair.

Parameters:

cache_dir (str | Path | None (default: None)) – Where to keep the download. Defaults to mantispy.settings.cache_dir.

Return type:

DataFrame

Returns:

A frame with source, the complex, and target, the symbol of a gene in it.

Notes

CORUM is free for academic, non-commercial use, and the EFAAR copy is distributed under CC BY-NC 4.0.

References

Celik et al. [2024].